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1. Dynamics of Scale-Free Semi-Synchronous Boolean Networks 1 M. Giacobini, M. Tomassini, P De Los Rios, & E. Pestelacci 2. How Scale-free Type-based Networks Emerge from Instance-based Dynamics 8 Tom Lenaerts, Hugues Bersini, & Francisco C. Santos 3. Evolving Biological Clocks using Genetic Regulatory Networks 15 Johannes F. Knabe, Chrystopher L. Nehaniv, Maria J. Schilstra, & Tom Quick 4. Evolution of Repressilators Using a Biologically-motivated Model of Gene Expression 22 Barry Drennan & Randall D. Beer 5. A Nonlinear Continuous Stochastic Model for Genetic Regulatory Networks: Caveats for Microrray Data Analysis 28 Simon Rosenfeld 6. The Role of Redundancy in the Robustness of Random Boolean Networks 35 Carlos Gershenson, Stuart A. Kauffman, & /lya Shmuelevich Development 7. An Endosymbiotic Model for Modular Acquisition in Stochastic Developmental Systems 42 John Rieffel & Jordan Pollack 8. Modeling of Pattern Formation in Cell Cultures 49 Scott Christley, Stuart A. Newman, & Mark S. Alber 9. Investigating Ontogenetic Space with Developmental Cell Lineages 56 Nicholas Geard & Janet Wiles 10. Heterochrony and Evolvability in Neural Network Development 63 Artur Matos, Reiji Suzuki, & Takaya Arita 11. Towards Shape and Structure Optimization with Evolutionary Development 70 Till Steiner, Markus Olhofer, & Bernhard Sendhoff 12. Wriggraph: A Kinetic Graph Model That Uniformly Describes Ontogeny and Motility of Artificial Creatures 77 Koji Sano & Hiraki Sayama 13. A Morphogenesis Model for Multiagent Embryogeny 84 Gregory Beurier, Fabien Michel, & Jacques Ferber vi Artificial Life X Evolution 14. Connecting Genotype with Phenotype using the Genome Template Model: Pleiotropy, Polygenic Traits, and Life-History Strategies R. E. DeSimone, A. Boondirek, & T J. Newman 15. Modeling Recombination's Role in the Evolution of HIV Drug Resistance Richard K. Belew & Max W Chang 16. An Evolutionary Model of Genotype Editing Luis M. Rocha, Ana Maguitman, Chien-Jeng Huang, Jasleen Kaur, & Sheetal Narayanan 17. A Structure of the Foothills of the Fitness Landscape in Protein Sequence Space Yuuki Hayashi, Takuyo Aita, Hitoshi Toyota, Yuzuru Husimi, ltaru Urabe, & Tetsuya Yomo 18. The Role of Space in the Success of Coevolutionary Learning Melanie Mitchell, Michael D. Thomure, & Nathan L. Williams 19. Phat Phenotypes for Agents in Niche Construction George Kampis & Laszlo Gulyas 20. Three Characteristics of Developmental, Self-repairable Cellular Systems to Improve Their Evolvability Mathieu S. Capcarrere & Can Oztiirkeri 21. Experimental Studies on Interaction among Correlated Traits Haitao Zhang & Michael Travisano Prebiotic Evolution and Artificial Chemistries 22. Quasi-Species and Aggregate Dynamics Anders Eriksson, Olof Gornerup, Martin Nilsson Jacobi, & Steen Rasmussen 23. Simulation Model of Prebiotic Evolution of Genetic Coding Sidney Markowitz, Alexei Drummond, Kay Nieselt, & Peter R. Wills 24. The Role of Programmed Death in the Persistence of Life Gordon C. Osbourn,Christina E. Warrender, & Ann M. Bouchard 25. Complexity Scaling of a Minimal Functional Chemistry Chris Salzberg 26. An Approach to Constructing Qualitative Models in Computational Cell Biology Using an Artificial Chemistry Based on Pattern Matching and Recombination Kazuto Tominaga, Keiji Kobayashi, Tooru Watanabe, Kazumasa Koizumi, & Koji Kishi Embodiment and Behavior 27. Self-Organization of Communication in Evolving Robots Davide Marocco & Stefano Nolfi Contents vii 28. Measuring Spatiotemporal Coordination in a Modular Robotic System Mikhail Prokopenko, Vadim Gerasimov, & Ivan Tanev 29. Let it Roll-Emerging Sensorimotor Coordination in a Spherical Robot Ralf Der, Georg Martius, & Frank Hesse 30. Synchronization within Homogeneous Neural Modules Controlling a Simulated Hexapod Robot Mariagiovanna Mazzapioda & Stefano Nolfi 31. Incorporating Energy Expenditure into Evolutionary Robotics Fitness Measure Gary McHale & Phil Husbands 32. TOPOS: Generalized Braitenberg Vehicles that Recognize Complex Real Sounds as Landmarks Pablo Gonzalez-Naida & Blanca Cases 33. Automated Synthesis of Body Schema using Multiple Sensor Modalities Josh Bongard, Victor Zykov, & Hod Lipson 34. Spontaneous Emergence of Self-Replicating Structures in Molecube Automata Gregory Studer & Hod Lipson 35. Developing a Reaching Behaviour in an Simulated Anthropomorphic Robotic Arm Through an Evolutionary Technique Gianluca Massera, Angelo Cangelosi, & Stefano Nolfi 36. Towards Evolvable Hovering Flight on a Physical Ornithopter Will Regan, Floris van Breugel, & Hod Lipson 37. Evolving an Integrated Phototaxis and Hole-avoidance Behavior for a Swarm-bot Anders Lyhne Christensen & Marco Dorigo 38. An Improved System for Artificial Creatures Evolution Thomas Miconi & Alastair Channon 39. Evolution of Virtual Catapults Nicolas Chaumont, Richard Egli, & Christoph Adami 40. The Evolution of Structural Organization in Digital Organisms Matthew Rupp, Eric Torng, & Charles Ofria Biologically-inspired Computing and Technology 41. Role of Inhibitions in Neural Networks for the Orientation Behaviour of Sand Scorpions DaeEun Kim 42. Passive Sensing and Active Sensing of a Biomimetic Whisker DaeEun Kim & Ralf Moller 43. A Cytoskeletal-Based Robotic Controller Jeffrey 0. Pfaffmann, Monica Brockmeyer, & Silvano Colombano viii Artificial Life X 44. Alternate Recruitment Strategies for SDS Darren R. Myatt, Mark Bishop, & Slawomir J. Nasuto 45. DNA as a Medium for Storing Digital Signals Sotirios A. Tsaftaris, Vassily Hatzimanikatis, & Aggelos K. Katsaggelos 46. Noise-Mediated Intermittent Synchronization of Collective Behaviors in the Probabilistic Cellular Automata Model of Neural Populations Marko Puljic & Robert Kozma Information and Complexity 47. Measuring Informational Distances Between Sensors and Sensor Integration Lars Olsson, Chrystopher L. Nehaniv, & Daniel Polani 48. Evolving Coordinated Behavior by Maximizing Information Structure Olaf Sporns & Max Lungarella 49. Evolution of Neural Structure and Complexity in a Computational Ecology Larry S. Yaeger & Olaf Sporns 50. Relevant Information in Optimized Persistence vs. Progeny Strategies Daniel Polani, Chrystopher L. Nehaniv, Thomas Martinetz, & Jan T. Kim 51. A Simple Modularity Measure for Search Spaces Based on Information Theory Peter Dauscher, Daniel Polani, & Richard A. Watson 52. Sensorimotor Information Flow in Genetic Regulatory Network Driven Control Systems Tom Quick, Chrystopher Nehaniv, Kerstin Dautenhahn, & Graham Roberts Collective Behavior and Population Dynamics 53. Influence of the Level of Polyandry and Genetic Architecture on Division of Labour Danesh Tarapore, Dario Floreano, & Laurent Keller 54. On Prey Grouping and Predator Confusion in Artificial Fish Schools Hanspeter Kunz, Thomas Ziiblin, & Charlotte K. Hemelrijk 55. Ideal Free Distribution in Agents with Evolved Neural Architectures Virgil Griffith & Larry S. Yaeger 56. EPICURE: An Agent-Based Foraging Model. Michael E. Roberts & Robert L. Goldstone 57. A Particle Swarm Selects for Evolution of Gliders in Non-Uniform 2D Cellular Automata J.J. Ventrella 58. On Self-Regulated Swarms, Societal Memory, Speed and Dynamics Vitorino Ramos, Carlos Fernandes, & Agostinho C. Rosa Contents 1x 59. Representing Classical Structures in Cellular Automata Peter R. Wills 60. Asymmetry between Even and Odd Levels of Recursion in a Theory of Mind Masanori Takano & Takaya Arita 61. SWAGES-An Extendable Distributed Experimentation System for Large-Scale Agent-Based Alife Simulations M. Scheutz, P. Schermerhorn, R. Connaughton, & A. Dingler 62. Real-time Evolving Swarms for Rapid Pattern Detection and Tracking Christopher Middendorf! & Matthias Scheutz 63. Pushing Up The Daisies J. G. Dyke & I. R. Harvey Evolutionary and Collective Games 64. Emergence of Cooperation in Heterogeneous Structured Populations F. C. Santos, J. M. Pacheco, & Tom Lenaerts 65. A Minimal Information Prisoner's Dilemma on Evolving Networks L. Luthi, M. Giacobini, & M. Tomassini 66. Game-Theoretic Robustness in Cooperation and Prejudice Reduction: A Graphic Measure Patrick Grim, Randy Au, Nancy Louie, Robert Rosenberger, William Braynen, Evan Selinger, & Robb E. Eason 67. How Spatial Locality Can Affect the Evolution of Niche Construction Reiji Suzuki & Takaya Arita 68. Cross-level Interactions Between Conflict Resolution and Survival Games Matthias Scheutz Language and Learning 69. A Cross-situational Learning Algorithm for Damping Homonymy in the Guessing Game Joachim De Beute, Bart De Vylder, & Tony Belpaeme 70. Collectivism and the Emergence of Linguistic Universals Georg Theiner 71. Strategies for Fast Convergence in Semiotic Dynamics Andrea Baronchelli, Luca Dall'Asta, Alain Barrat, & Vittorio Loreto 72. Generalization in Languages Evolved for Mobile Robots Ruth Schulz, Paul Stockwell, Mark Wakabayashi, & Janet Wiles 73. On Crossing Fitness Valleys with the Baldwin Effect Rob Mills & Richard A. Watson 74. On the Influence of Lifetime Learning on Selection Pressure Ingo Paenke, Tadeusz Kawecki, & Bernard Sendhoff x Artificial Life X 75. Learning on a Continuum in Evolved Dynamical Node Networks Eduardo Izquierdo-Torres & Inman Harvey Philosophy and Formal Models 76. ALife Models as Epistemic Artefacts Xabier Barandiaran & Alvaro Moreno 77. Computational Modelling, Explicit Mathematical Treatments, and Scientific Explanation John Bryden & Jason Noble 78. Representatio

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